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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
Fecha : |
23/02/2021 |
Actualizado : |
23/02/2021 |
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
Autor : |
QUEZADA, M.; AMADEU, R. R.; VIGNALE, B.; CABRERA, D.; PRITSCH, C.; GARCIA, A. A. F. |
Afiliación : |
MARIANELLA FERNANDA QUEZADA MACCHIAVELLO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay.; RODRIGO RAMPAZO AMADEU, Laboratório de Genética Estatística, Departamento de Genética, Escola Superior de Agricultura "Luiz de Queiroz", Universidade de São Paulo, Piracicaba, Brazil; BEATRIZ VIGNALE, Mejoramiento Genético, Departamento de Producción Vegetal, Estación Experimental de la Facultad de Agronomía, Universidad de la República, Salto, Uruguay; CARLOS DANILO CABRERA BOLOGNA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; CLARA PRITSCH, Laboratorio de Biotecnología, Departamento de Biología Vegetal, Facultad de Agronomía, Universidad de la República, Montevideo, Uruguay; ANTONIO AUGUSTO FRANCO GARCIA, Laboratório de Genética Estatística, Departamento de Genética, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba, Brazil. |
Título : |
Construction of a high-density genetic map of Acca sellowiana (Berg.) Burret, an outcrossing species, based on two connected mapping populations. |
Complemento del título : |
Original Research Article. |
Fecha de publicación : |
2021 |
Fuente / Imprenta : |
Frontiers in Plant Science, 23 February 2021, Volume 12, Article number 626811. OPEN ACCESS. Doi: https://doi.org/10.3389/fpls.2021.626811 |
DOI : |
10.3389/fpls.2021.626811 |
Idioma : |
Inglés |
Notas : |
Article history: Received: 06 November 2020; Accepted: 12 January 2021; Published: 23 February 2021.
Edited by: Maria Luisa Badenes, Instituto Valenciano de Investigaciones Agrarias, Spain.
Reviewed by: Shouvik Das, Indian Agricultural Research Institute (ICAR), India; Jonathan Elias Maldonado, Pontificia Universidad Católica de Chile, Chile.
Correspondence: Antonio Augusto Franco Garcia - augusto.garcia@usp.br
Specialty section: This article was submitted to Plant Breeding, a section of the journal Frontiers in Plant Science.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY).
This article is part of the research topic: Breeding Innovations in Underutilized Temperate Fruit Trees:
https://www.frontiersin.org/research-topics/14915/breeding-innovations-in-underutilized-temperate-fruit-trees#articles |
Contenido : |
ABSTRACT.
Acca sellowiana, known as feijoa or pineapple guava, is a diploid, (2n = 2x = 22) outcrossing fruit tree species native to Uruguay and Brazil. The species stands out for
its highly aromatic fruits, with nutraceutical and therapeutic value. Despite its promising agronomical value, genetic studies on this species are limited. Linkage genetic maps are valuable tools for genetic and genomic studies, and constitute essential tools in breeding programs to support the development of molecular breeding strategies. A high-density composite genetic linkage map of A. sellowiana was constructed using two genetically connected populations: H5 (TCO × BR, N = 160) and H6 (TCO × DP, N = 184). Genotyping by sequencing (GBS) approach was successfully applied for developing single nucleotide polymorphism (SNP) markers. A total of 4,921 SNP markers were identified using the reference genome of the closely related species Eucalyptus grandis, whereas other 4,656 SNPs were discovered using a de novo pipeline. The individual H5 and H6 maps comprised 1,236 and 1,302 markers distributed over the expected 11 linkage groups, respectively. These two maps spanned a map length of 1,593 and 1,572 cM, with an average inter-marker distance of 1.29 and 1.21 cM, respectively. A large proportion of markers were common to both maps and showed a high degree of collinearity. The composite map consisted of 1,897 SNPs markers with a total map length of 1,314 cM and an average inter-marker distance of 0.69. A novel approach for the construction of composite maps where the meiosis information of individuals of two connected populations is captured in a single estimator is described. A high-density, accurate composite map based on a consensus ordering of markers provides a valuable contribution for future genetic research and breeding efforts in A. sellowiana. A novel mapping approach based on an estimation of multipopulation recombination fraction described here may be applied in the construction of dense composite genetic maps for any other outcrossing diploid species.
© 2021 Quezada, Amadeu, Vignale, Cabrera, Pritsch and Garcia. MenosABSTRACT.
Acca sellowiana, known as feijoa or pineapple guava, is a diploid, (2n = 2x = 22) outcrossing fruit tree species native to Uruguay and Brazil. The species stands out for
its highly aromatic fruits, with nutraceutical and therapeutic value. Despite its promising agronomical value, genetic studies on this species are limited. Linkage genetic maps are valuable tools for genetic and genomic studies, and constitute essential tools in breeding programs to support the development of molecular breeding strategies. A high-density composite genetic linkage map of A. sellowiana was constructed using two genetically connected populations: H5 (TCO × BR, N = 160) and H6 (TCO × DP, N = 184). Genotyping by sequencing (GBS) approach was successfully applied for developing single nucleotide polymorphism (SNP) markers. A total of 4,921 SNP markers were identified using the reference genome of the closely related species Eucalyptus grandis, whereas other 4,656 SNPs were discovered using a de novo pipeline. The individual H5 and H6 maps comprised 1,236 and 1,302 markers distributed over the expected 11 linkage groups, respectively. These two maps spanned a map length of 1,593 and 1,572 cM, with an average inter-marker distance of 1.29 and 1.21 cM, respectively. A large proportion of markers were common to both maps and showed a high degree of collinearity. The composite map consisted of 1,897 SNPs markers with a total map length of 1,314 cM and an average inter-marker distance of 0.69.... Presentar Todo |
Palabras claves : |
Composite genetic map; Genotyping by sequencing; Multiparent family; Pineapple guava. |
Thesagro : |
ACCA SELLOWIANA; FEIJOA; MYRTACEAE. |
Asunto categoría : |
F30 Genética vegetal y fitomejoramiento |
URL : |
https://www.frontiersin.org/articles/10.3389/fpls.2021.626811/full
https://www.frontiersin.org/articles/10.3389/fpls.2021.626811/pdf
|
Marc : |
LEADER 03974naa a2200289 a 4500 001 1061756 005 2021-02-23 008 2021 bl uuuu u00u1 u #d 024 7 $a10.3389/fpls.2021.626811$2DOI 100 1 $aQUEZADA, M. 245 $aConstruction of a high-density genetic map of Acca sellowiana (Berg.) Burret, an outcrossing species, based on two connected mapping populations.$h[electronic resource] 260 $c2021 500 $aArticle history: Received: 06 November 2020; Accepted: 12 January 2021; Published: 23 February 2021. Edited by: Maria Luisa Badenes, Instituto Valenciano de Investigaciones Agrarias, Spain. Reviewed by: Shouvik Das, Indian Agricultural Research Institute (ICAR), India; Jonathan Elias Maldonado, Pontificia Universidad Católica de Chile, Chile. Correspondence: Antonio Augusto Franco Garcia - augusto.garcia@usp.br Specialty section: This article was submitted to Plant Breeding, a section of the journal Frontiers in Plant Science. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). This article is part of the research topic: Breeding Innovations in Underutilized Temperate Fruit Trees: https://www.frontiersin.org/research-topics/14915/breeding-innovations-in-underutilized-temperate-fruit-trees#articles 520 $aABSTRACT. Acca sellowiana, known as feijoa or pineapple guava, is a diploid, (2n = 2x = 22) outcrossing fruit tree species native to Uruguay and Brazil. The species stands out for its highly aromatic fruits, with nutraceutical and therapeutic value. Despite its promising agronomical value, genetic studies on this species are limited. Linkage genetic maps are valuable tools for genetic and genomic studies, and constitute essential tools in breeding programs to support the development of molecular breeding strategies. A high-density composite genetic linkage map of A. sellowiana was constructed using two genetically connected populations: H5 (TCO × BR, N = 160) and H6 (TCO × DP, N = 184). Genotyping by sequencing (GBS) approach was successfully applied for developing single nucleotide polymorphism (SNP) markers. A total of 4,921 SNP markers were identified using the reference genome of the closely related species Eucalyptus grandis, whereas other 4,656 SNPs were discovered using a de novo pipeline. The individual H5 and H6 maps comprised 1,236 and 1,302 markers distributed over the expected 11 linkage groups, respectively. These two maps spanned a map length of 1,593 and 1,572 cM, with an average inter-marker distance of 1.29 and 1.21 cM, respectively. A large proportion of markers were common to both maps and showed a high degree of collinearity. The composite map consisted of 1,897 SNPs markers with a total map length of 1,314 cM and an average inter-marker distance of 0.69. A novel approach for the construction of composite maps where the meiosis information of individuals of two connected populations is captured in a single estimator is described. A high-density, accurate composite map based on a consensus ordering of markers provides a valuable contribution for future genetic research and breeding efforts in A. sellowiana. A novel mapping approach based on an estimation of multipopulation recombination fraction described here may be applied in the construction of dense composite genetic maps for any other outcrossing diploid species. © 2021 Quezada, Amadeu, Vignale, Cabrera, Pritsch and Garcia. 650 $aACCA SELLOWIANA 650 $aFEIJOA 650 $aMYRTACEAE 653 $aComposite genetic map 653 $aGenotyping by sequencing 653 $aMultiparent family 653 $aPineapple guava 700 1 $aAMADEU, R. R. 700 1 $aVIGNALE, B. 700 1 $aCABRERA, D. 700 1 $aPRITSCH, C. 700 1 $aGARCIA, A. A. F. 773 $tFrontiers in Plant Science, 23 February 2021, Volume 12, Article number 626811. OPEN ACCESS. Doi: https://doi.org/10.3389/fpls.2021.626811
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INIA Las Brujas (LB) |
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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
Fecha actual : |
27/04/2021 |
Actualizado : |
27/04/2021 |
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
Circulación / Nivel : |
Internacional - -- |
Autor : |
BRIANO-RODRÍGUEZ, C.; ROMERO, A.; LLAMBÍ, S.; BRANDA, A.; FEDERICI, M.; GIANNITTI, F.; CAFFARENA, D.; SCHILD, C.; CASAUX, M.L.; DUTRA, F. |
Afiliación : |
CAROLINA BRIANO-RODRIGUEZ, DILAVE "Miguel C Rubino" (MGAP), Laboratorio Regional Este, Treinta y Tres, Uruguay; AGUSTÍN ROMERO, DILAVE "Miguel C Rubino" (MGAP), Laboratorio Regional Este, Treinta y Tres, Uruguay; SILVIA LLAMBÍ, Facultad de Veterinaria, Universidad de la República (UDELAR), Uruguay; ANDREA BRANDA SICA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; MARIA TERESA FEDERICI RODRIGUEZ, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FEDERICO GIANNITTI, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; RUBEN DARÍO CAFFARENA LEDESMA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; CARLOS SCHILD, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; MARÍA LAURA CASAUX, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FERNANDO DUTRA QUINTELA, DILAVE "Miguel C Rubino" (MGAP), Laboratorio Regional Este, Treinta y Tres, Uruguay. |
Título : |
Lethal and semi-lethal mutations in Holstein calves in Uruguay. [Mutações letais e semi-letais em bezerros da raça Holandesa no Uruguai.] |
Complemento del título : |
Animal Production. |
Fecha de publicación : |
2021 |
Fuente / Imprenta : |
Ciencia Rural, 2021, Volume 51, Issue 7, Article number e20200734. OPEN ACCESS. Doi: https://doi.org/10.1590/0103-8478cr20200734 |
ISSN : |
0103-8478; eISSN 1678-4596. |
DOI : |
10.1590/0103-8478cr20200734 |
Idioma : |
Inglés |
Notas : |
Article history: Received: August 07, 2020; Accepted: November 23, 2020; Revised: February 23, 2021.
This research was funded by grant N-15156 of the uruguayan Instituto Nacional de Investigación Agropecuaria (INIA). |
Contenido : |
ABSTRACT.
Genetic disorders in Holstein cattle are a health problem that has grown worldwide in recent years, compromising the sustainability of modern dairy production. In Uruguay, Holstein-based milk production is one of the most important sectors of the country?s economy, but high levels of inbreeding have decreased the breed?s fertility in recent decades. This study investigated the presence and diffusion of lethal and semi-lethal alleles causing embryo death, abortions, fetal malformations, and neonatal diseases in Holstein calves. Using the GeneSeek® Genomic Profiler? Bovine 50K BeadChip, we genotyped 383 calves (1?30 days-old) from 27 farms located in the main dairy region of Uruguay. Results showed a high prevalence of farms (85%) and carrier calves (21%), including one or more of the following semi-lethal or lethal alleles: Syndactylism (4.18%), brachyspina (3.39%), cholesterol deficiency haplotype (2.61%), complex vertebral malformation (2.09%), bovine leukocyte adhesion deficiency (1.04%s), and Holstein haplotypes HH1 (4.44%), HH3 (3.13%), HH4 (1.04%), and HH5 (0.26%). Most of these alleles had not been recognized previously in Uruguay. We concluded that lethal and semi-lethal mutations are widespread in the Holstein breed in Uruguay. More studies are required to determine their impact on dairy cattle fertility. © 2021, Universidade Federal de Santa Maria. All rights reserved.
RESUMO.
Os distúrbios genéticos nos bovinos da raça Holandesa são um problema de saúde que cresceu nos últimos anos a nível mundial, comprometendo a sustentabilidade da produção leiteira moderna. No Uruguai, a produção leiteira com base na raça Holstein é um dos setores mais importantes da economia do país, mas altos níveis de endogamia diminuíram a fertilidade da raça nas últimas décadas. O objetivo deste estudo foi investigar a presença e difusão de alelos letais e semi-letais causando morte de embriões, abortos, malformações fetais e doenças neonatais em bezerros da raça Holandesa. Usando o BeadChip Bovino 50K GeneSeek® Genomic Profiler?, genotipamos 383 bezerros (menos de um mês) de 27 fazendas localizadas na principal região leiteira do Uruguai. Os resultados mostraram uma alta prevalência de fazendas (85%) e bezerros portadores (21%), incluindo um ou mais dos seguintes alelos letais ou semi-letais: sindactilismo (4,18%), braquipespina (3,39%), haplótipo de deficiência de colesterol (2,61%), malformação vertebral complexa (2,09%), deficiência de adesão de leucócitos bovinos (1,04% s) e haplótipos de Holstein HH1 (4,44%), HH3 (3,13%), HH4 (1,04%) e HH5 (0,26%). A maioria desses alelos não havia sido reconhecida anteriormente no país. Concluímos que as mutações letais e semi-letais são comuns na raça Holstein no Uruguai. Mais estudos são necessários para determinar seu impacto na fertilidade do gado leiteiro. MenosABSTRACT.
Genetic disorders in Holstein cattle are a health problem that has grown worldwide in recent years, compromising the sustainability of modern dairy production. In Uruguay, Holstein-based milk production is one of the most important sectors of the country?s economy, but high levels of inbreeding have decreased the breed?s fertility in recent decades. This study investigated the presence and diffusion of lethal and semi-lethal alleles causing embryo death, abortions, fetal malformations, and neonatal diseases in Holstein calves. Using the GeneSeek® Genomic Profiler? Bovine 50K BeadChip, we genotyped 383 calves (1?30 days-old) from 27 farms located in the main dairy region of Uruguay. Results showed a high prevalence of farms (85%) and carrier calves (21%), including one or more of the following semi-lethal or lethal alleles: Syndactylism (4.18%), brachyspina (3.39%), cholesterol deficiency haplotype (2.61%), complex vertebral malformation (2.09%), bovine leukocyte adhesion deficiency (1.04%s), and Holstein haplotypes HH1 (4.44%), HH3 (3.13%), HH4 (1.04%), and HH5 (0.26%). Most of these alleles had not been recognized previously in Uruguay. We concluded that lethal and semi-lethal mutations are widespread in the Holstein breed in Uruguay. More studies are required to determine their impact on dairy cattle fertility. © 2021, Universidade Federal de Santa Maria. All rights reserved.
RESUMO.
Os distúrbios genéticos nos bovinos da raça Holandesa são um problema de saúde ... Presentar Todo |
Palabras claves : |
BLAD; Bovine hereditary diseases; Brachyspina; Braquipespina; Cholesterol deficiency; Complex vertebral malf; Deficiência de colesterol; Doenças hereditárias; Haplótipos holandeses; Holstein haplotypes; Syndactyly. |
Asunto categoría : |
L73 Enfermedades de los animales |
URL : |
https://www.scielo.br/pdf/cr/v51n7/0103-8478-cr-51-07-e20200734.pdf
|
Marc : |
LEADER 04383naa a2200397 a 4500 001 1061998 005 2021-04-27 008 2021 bl uuuu u00u1 u #d 022 $a0103-8478; eISSN 1678-4596. 024 7 $a10.1590/0103-8478cr20200734$2DOI 100 1 $aBRIANO-RODRÍGUEZ, C. 245 $aLethal and semi-lethal mutations in Holstein calves in Uruguay. [Mutações letais e semi-letais em bezerros da raça Holandesa no Uruguai.]$h[electronic resource] 260 $c2021 500 $aArticle history: Received: August 07, 2020; Accepted: November 23, 2020; Revised: February 23, 2021. This research was funded by grant N-15156 of the uruguayan Instituto Nacional de Investigación Agropecuaria (INIA). 520 $aABSTRACT. Genetic disorders in Holstein cattle are a health problem that has grown worldwide in recent years, compromising the sustainability of modern dairy production. In Uruguay, Holstein-based milk production is one of the most important sectors of the country?s economy, but high levels of inbreeding have decreased the breed?s fertility in recent decades. This study investigated the presence and diffusion of lethal and semi-lethal alleles causing embryo death, abortions, fetal malformations, and neonatal diseases in Holstein calves. Using the GeneSeek® Genomic Profiler? Bovine 50K BeadChip, we genotyped 383 calves (1?30 days-old) from 27 farms located in the main dairy region of Uruguay. Results showed a high prevalence of farms (85%) and carrier calves (21%), including one or more of the following semi-lethal or lethal alleles: Syndactylism (4.18%), brachyspina (3.39%), cholesterol deficiency haplotype (2.61%), complex vertebral malformation (2.09%), bovine leukocyte adhesion deficiency (1.04%s), and Holstein haplotypes HH1 (4.44%), HH3 (3.13%), HH4 (1.04%), and HH5 (0.26%). Most of these alleles had not been recognized previously in Uruguay. We concluded that lethal and semi-lethal mutations are widespread in the Holstein breed in Uruguay. More studies are required to determine their impact on dairy cattle fertility. © 2021, Universidade Federal de Santa Maria. All rights reserved. RESUMO. Os distúrbios genéticos nos bovinos da raça Holandesa são um problema de saúde que cresceu nos últimos anos a nível mundial, comprometendo a sustentabilidade da produção leiteira moderna. No Uruguai, a produção leiteira com base na raça Holstein é um dos setores mais importantes da economia do país, mas altos níveis de endogamia diminuíram a fertilidade da raça nas últimas décadas. O objetivo deste estudo foi investigar a presença e difusão de alelos letais e semi-letais causando morte de embriões, abortos, malformações fetais e doenças neonatais em bezerros da raça Holandesa. Usando o BeadChip Bovino 50K GeneSeek® Genomic Profiler?, genotipamos 383 bezerros (menos de um mês) de 27 fazendas localizadas na principal região leiteira do Uruguai. Os resultados mostraram uma alta prevalência de fazendas (85%) e bezerros portadores (21%), incluindo um ou mais dos seguintes alelos letais ou semi-letais: sindactilismo (4,18%), braquipespina (3,39%), haplótipo de deficiência de colesterol (2,61%), malformação vertebral complexa (2,09%), deficiência de adesão de leucócitos bovinos (1,04% s) e haplótipos de Holstein HH1 (4,44%), HH3 (3,13%), HH4 (1,04%) e HH5 (0,26%). A maioria desses alelos não havia sido reconhecida anteriormente no país. Concluímos que as mutações letais e semi-letais são comuns na raça Holstein no Uruguai. Mais estudos são necessários para determinar seu impacto na fertilidade do gado leiteiro. 653 $aBLAD 653 $aBovine hereditary diseases 653 $aBrachyspina 653 $aBraquipespina 653 $aCholesterol deficiency 653 $aComplex vertebral malf 653 $aDeficiência de colesterol 653 $aDoenças hereditárias 653 $aHaplótipos holandeses 653 $aHolstein haplotypes 653 $aSyndactyly 700 1 $aROMERO, A. 700 1 $aLLAMBÍ, S. 700 1 $aBRANDA, A. 700 1 $aFEDERICI, M. 700 1 $aGIANNITTI, F. 700 1 $aCAFFARENA, D. 700 1 $aSCHILD, C. 700 1 $aCASAUX, M.L. 700 1 $aDUTRA, F. 773 $tCiencia Rural, 2021, Volume 51, Issue 7, Article number e20200734. OPEN ACCESS. Doi: https://doi.org/10.1590/0103-8478cr20200734
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